µC/CPU is a processor/compiler port needed for µC/FS to be CPU/compiler-independant. Ports for the most popular architectures are already available in the µC/CPU distribution. If the µC/CPU port for your target architecture is not available, you should create your own based on the port template (also available in µC/CPU distribution). You should refer to the µC/CPU user manual to know how you should use it in your project.
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